Abstract. The network structure of zircon (ZrSiO4) in the amorphous and liquid states was
investigated using molecular dynamics simulation and visualization. The short range order
(SRO) and intermediate range order (IRO) characteristics were analyzed via distribution of
units TOn and OTm (T=Zr, Si) linkages. The results of this investigation of the network
structure and size distribution of the Si-O and Zr-O subnets shows that the zircon structure
decomposes into Zr- and Si-rich regions. The micro-phase separation and structural and
compositional heterogeneities of ZrSiO4 are also discussed in this work.
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JOURNAL OF SCIENCE OF HNUE DOI: 10.18173/2354-1059.2016-0043
Mathematical and Physical Sci., 2016, Vol. 61, No. 7, pp. 144-150
This paper is available online at
STRUCTURE OF AMORPHOUS AND LIQUID ZIRCON
Nguyen Viet Huy1,2, Tran Thuy Duong2, Nguyen Van Hong2
1Thai Binh College of Eduaction
2Hanoi University of Science and Technology
Abstract. The network structure of zircon (ZrSiO4) in the amorphous and liquid states was
investigated using molecular dynamics simulation and visualization. The short range order
(SRO) and intermediate range order (IRO) characteristics were analyzed via distribution of
units TOn and OTm (T=Zr, Si) linkages. The results of this investigation of the network
structure and size distribution of the Si-O and Zr-O subnets shows that the zircon structure
decomposes into Zr- and Si-rich regions. The micro-phase separation and structural and
compositional heterogeneities of ZrSiO4 are also discussed in this work.
Keywords: Oxides, molecular dynamics simulation, amorphous and liquid zircon.
1. Introduction
Zircon is an important material in nuclear and ceramics industries. In addition, it is a good
alternative to conventional silicon oxide as a dielectric material in metal-semiconductor devices
[1-5]. Therefore, zircon has attracted a considerable amount of interest from material scientists.
Experimental and simulation study results show that the structure of amorphous and liquid
SiO2 is that of SiO4, SiO5 and SiO6 units. These units link to each other via bridging oxygens
forming a network of SiOx (x = 4, 5, 6). At low density, most of structural units are SiO4 in a
tetrahedral network. At high pressure, most of structural units are SiO6 in an octahedral network.
The distribution of polyhedra (SiOx) is not uniform but it does form a cluster of SiO4, SiO5
and SiO6. The spatial distribution of structural units (cluster of SiOx) as well as polymerization
is dependent on the density of the sample.This results in different physical properties such as
abnormal diffusivity and dynamic heterogeneity [6-14].
For amorphous and liquid ZrO2, the structure is formed from the ZrO5, ZrO6 and ZrO7
polyhedra (most of the structural units are ZrO6 and ZrO7). These structural units connect to
each other forming a network of ZrOx (x = 5, 6, 7) with a significant contribution of edge
sharing of oxygen in addition to corner sharing. The coordination number of oxygen is 2, 3 and 4,
however the three- and four fold predominate [15-17]. The variety of large oxygen coordination and
polyhedral connections with short Zr–O bond lifetimes, induced by the relatively large ionic radius
of zirconium, leads to a reduced electronic band gap and increased delocalization in the ionic Zr–O
bonding. Understanding chemical bonding and network structure as well as spatial distribution of
Received August 10, 2016. Accepted October 5, 2016.
Contact Nguyen Viet Huy, e-mail address: nvhuy282@yahoo.com
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Structure of amorphous and liquid Zircon
polyhedra ZrOx helps clarify the extremely low viscosity of liquid ZrO2 and the absence of a
first sharp diffraction peak. For amorphous and liquid ZrSiO4, many experimental and simulation
studies have been done to clarify the structure as well as physical properties [16-22]. In the work
[20] of R. Devanathan and co-workers a molecular dynamics method was used to produce two
different amorphous states with distinct densities and structures. Results show that when in a high
density state, the zircon structure is intact but the bond angle distributions are broader, and 4% of
the SiO4 units are polymerized. In the low density amorphous state, the Zr- and Si-coordination
numbers are lower, and the Zr-O and Si-O bond lengths are shorter than the corresponding values
for the crystal state. In addition, a highly polymerized Si network is observed in the low density
amorphous state. These features have all been experimentally observed in natural metamict zircon
[21, 22]. Models with larger number of atoms (5400 atoms) in this investigation should help obtain
more reliable results for structures at high temperature than that obtained in earlier studies. The
results also indicate a decomposition of ZrSiO4 into ZrO2- and SiO2-rich regions.
2. Content
2.1. Computational method
Molecular dynamic (MD) simulation is conducted for ZrSiO4 systems (5400 atoms consist
of 900 Si, 900 Zr, 3600 O atoms) at temperatures of 300 K (amorphous state) and 3500 K
(liquid state). Simple pair-wise additive potential with Coulombic interaction and Born-Mayer
repulsion was used to construct ZrSiO4 models. The potential functions have the form: ϕij =
qiqj/rij + Aijexp(−Bijrij). Details of the potential parameters can be found in Ref. [19]. The
software used for our calculations, analysis and visualization was written by ourselves. It was
written in C language and executed on a Linux operating system. The Verlet algorithm was
applied to integrate the equation of motion with the MD step of 1.0 fs. An initial configuration
of the sample was created by randomly placing all of the atoms in a cubic box (simulation
box). To remove the effect of remembered initial configuration, the sample was heated to 7000K.
Equilibrated melt was obtained by relaxing the initial configuration for about 100 ps. After that,
the sample was cooled to temperature of 3500 K (liquid state) and 300 K (amorphous state). A
long relaxation was then done in the NPT ensemble (at constant temperature and pressure) to
obtain a sample at ambient pressure. In order to improve the statistics, the measured quantities of
coordination number, partial radial distribution function, bond-angle distribution and bond-length
distribution were computed by averaging over 2000 configurations separated by 50 MD steps.
2.2. Results and discussions
First, to confirm the reliability of the material model, we investigated the structural
characteristics of pair radial distribution function (PRDF) and coordination number distribution.
Figure 1 shows the PRDFs of the Si-O and Zr-O pairs. The results show that the Si-O bond lengths
are about 1.60 A˚ for the model at 300 K and 1.56 A˚ for the model at 3500 K. This means that the
Si-O bond length in liquid zircon is a little shorter than in it is amorphous zircon. From Figure 1,
it can be seen that the first peak of PRDFs gSi−O(r) and gSi−O(r) in the amorphous state (at 300
K) is more sharper than in the liquid state (at 3500 K). This demonstrates that structural order in
amorphous zircon is higher than it is in liquid zircon.
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Nguyen Viet Huy, Tran Thuy Duong and Nguyen Van Hong
Table. 1. Distribution of coordination number ZSi−O, ZZr−O
and ZO−T (here T is Si or Zr)
Percentage of Zij
ZSi−O 300K 3500K ZZr−O 300 K 3500K ZO−T 300K 3500K
2 0.00 2.92 4 3.46 8.84 1 0.11 1.25
3 71.44 69.61 5 64.82 66.28 2 85.53 85.56
4 27.50 26.04 6 31.20 24.37 3 14.25 12.89
5 1.07 1.41 7 0.53 0.49 4 0.11 0.31
Table 1 shows the distribution of coordination number ZSi−O, ZZr−O and ZO−T (T is Si or
Zr) of amorphous and liquid zircon. It can be seen that most of the Si is surrounded by three or four
oxygens. For the zircon model at 300 K, the fraction which is three-fold and four-fold is about 71%
and 27% respectively. For the model at 3500K, the fraction which iso three-fold and four-fold is
about 69% and 26% respectively. This means that the distribution of coordination number ZSi−O in
an amorphous state is similar to that in a liquid state. For the Zr-O pair, most of the Zr is surrounded
by five or six oxygens. For the model at 300 K, the fraction which is five-fold and six-fold is about
64% and 31% respectively. For model at 3500 K, fraction of five-fold and six-fold is about 66%
and 24% respectively. This means that for liquid zircon, the six-fold fraction is smaller than that in
the amorphous state. In contrast, the four-fold and five-fold fractions in the liquid state are larger
than those in the amorphous state (see Table 1). The distribution of coordination number ZO-T in
the amorphous state is similar to that in the liquid state. Most of the O is surrounded by two or
three cations (Si or Zr). To clarify the local environment of the oxygen, we have investigated the
distribution of all kind of OT2 and OT3 linkages (see Table 2).
Figure 1. Si-O and Zr-O pair radial distribution functions of ZrSiO4 at 300 K and 3500 K
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Structure of amorphous and liquid Zircon
Figure 2. Si-O, Zr-O and Zr-O-Si networks at 300 K from left to right respectively
Figure 3. Cluster of SiOx with 257 atoms in model ZrSiO4 at 300 K (left) and that
with 252 atoms at 3500 K (right)
Table 2. Distribution of all kind of OT2 and OT3 linkages (T is Si or Zr)
Linkages 300 K 3500 K
Si-O-Zr 1439 1419
OT2 O-Zr2 1339 1333
O-Si2 301 328
O-Zr3 48 36
OT3 O-Si3 93 75
Si2-O-Zr 208 202
Si-O-Zr2 164 151
From Table 2, it can be seen that most of the OT2 linkages are Si-O-Zr and O-Zr2. For the
model at 300 K, the number of oxygens forming Si-O-Zr and O-Zr2 linkages is 1439 and 1339
respectively. For the model at 3500 K, the number of oxygens forming Si-O-Zr and O-Zr2 linkages
is 1419 and 1333 respectively. Most of the OT3 linkages are Si2-O-Zr and Si-O-Zr2. The number
of oxygens forming Si2-O-Zr and Si-O-Zr2 are 208 and 164 respectively for the model at 300 K and
it is 202 and 151 respectively for the model at 3500 K. It can be seen that there exists a significant
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Nguyen Viet Huy, Tran Thuy Duong and Nguyen Van Hong
amount of O-Si2 and O-Si3 (oxygen that only links to Si) and O-Zr2 and O-Zrv (oxygen that only
links to Zr) linkage in both models (see Tables 2 and 3).
Table 3. Distribution of OSi, OZr, OSi,Zr, BO and NBO
Linkages 300 K 3500 K
OSi 394 413
OZr 1392 1405
OSi,Zr 1814 1782
BO 605 613
NBO 1603 1573
(OSi being oxygen that links only to Si, OZr means oxygens that only link to Zr,
OSi,Zr being oxygen that links only to both Si and Zr,
BO: bridging oxygen is an oxygen that links with at least two silicon atoms,
NBO: none-bridging oxygen is an oxygen that links with only one silicon atom)
Table 3 shows the distribution of special linkages such as oxygen that links only to silicon,
oxygen that links only to zirconium, oxygen that links to both silicon and zirconium, bridging
oxygen, and non-bridging oxygen. It can be seen that the distribution of OSi, OZr, OZr,Si, BO,
and NBO of zircon at 300 K and 3500 K is similar (in other word, there is not much difference).
The existence of OSi, and OZr linkages of significant amount means that in model existing Si-rich
regions besides those which are Zr-rich. This shows a compositional heterogeneity in ZrSiO4. This
is a microphase separation in the multicomponent oxides. Figure 2 shows the network structure at
300 K for the Si-O network where oxygen links only to silicon, the Zr-O network where oxygen
links only to zirconium, and the Si-O-Zr network where oxygen links to both silicon and zirconium.
Figure 2, again demonstrates the compositional heterogeneity of ZrSiO4.
Table 4. Size-distribution of SiOx- and ZrOx-clusters at 300 K and 3500 K
SiOx clusters ZrOx cluster
300 K 3500 K 300 K 3500 K
Nc Na Nc Na Nc Na Nc Na
190 <10 201 <10 3 5 1 6
60 10-29 57 10-29 2 6 3 7
17 30-100 18 30-100 1 4079 1 11
1 186 1 178 1 22
1 257 1 252 1 4046
Nc is the number of cluster and Na is the number of atoms in one cluster
In addition, it also shows that the Si-O network is broken into subnets (clusters). The number
of oxygens that link only to Zr compares to that which links only to Si and the Zr-O network and
tends to form a large network. The Si-O-Zr network forms a boundary links between the Si-O
network and the Zr-O network. Table 4 shows the size distribution of the Si-O and Zr-O networks
at 300 K and 3500 K. Table 4 shows that in the ZrSiO4 model at 300 K, the number of SiOx clusters
with less than 10 atoms is 190; those with 10-29 atoms is 60; Those with 30 to 100 atoms is 17.
There exist only two clusters with more than 100 atoms. Figure 3 show typical SiOx-clusters with a
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Structure of amorphous and liquid Zircon
size of 257 and 252 atoms which correspond to models at 300 K and 3500 K. The size-distribution
of SiOx clusters for the model at 3500 K is similar to that for the model at 300 K. This means that
the Si-O network is almost not dependent on temperature. For both models at 300 K and 3500 K,
the size-distribution of the ZrOx-clusters is that of a large cluster plus several with less than 10
atoms (a cluster with only one ZrOx unit).
3. Conclusion
The structure of zircon in both the amorphous and liquid state consists mainly of the basic
structural units SiO3, SiO4, ZrO5 and ZrO6. The Si-O bond length in the liquid state is a little
smaller than that in the amorphous state. The structure of zicon in the amorphous state is more
orderly than that in the liquid state. Most of the O is surrounded by two or three cations (Si or Zr)
forming linkages O-Si2, Zr-O-Si, O-Zr2, O-Si3, Zr-O-Si2, Si-O-Zr2 and O-Zr3. The existence of
the O-Zr2, O-Zr3 and O-Si2, O-Si3 linkages reveals a microphase separation in the amorphous and
liquid zircon. The Si-O network is broken into clusters with a size of several to several hundred
atoms. The network structure of zircon consists of three kinds of networks and the Si-O, Zr-O,
Si-O-Zr and Si-O-Zr networks, with the later two serving as a boundary between Si-O and Zr-O
networks.
Acknowledgement: This research was funded by the Vietnam National Foundation for
Science and Technology Development (NAFOSTED) under Grant Number: 103.05-2014.40.
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