Abstract. EI MS spectra show that ester bond cleavage is predominant. Compounds 8, 9
and 10 have a molecular weight 400 g/mole or more and suffered fragmentation along
the GC column, hence their molecular ions were not observed. The collected molecular
ions [M]+ correspond to the expected structures and followed [M+1] +, nitrogen rule, and
some first fragmentations. The ortho disubstituted benzene ring such as compound 1
gives peaks at m/z 120 and m/z 161. Compounds 3, 5, 7, 8, 9 and 11 have fragmentations
controlled by the resonance effect to explain the existence of a peak at m/z 147. An MS
analysis of the compounds 3-[2-(allyloxy)phenyl] propanoic acid - containing esters
shows a protonation followed by loss of hydrogen molecules as well. The ortho effect
allows us to state that compound 11 has a peak at m/z 307 as well.
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JOURNAL OF SCIENCE OF HNUE DOI: 10.18173/2354-1059.2015-00071
Chemical and Biological Sci. 2015, Vol. 60, No. 9, pp. 3-8
This paper is available online at
Received August 25, 2015. Accepted November 30, 2015.
Contact Duong Quoc Hoan, e-mail address: hoanqduong@gmail.com
3
MASS SPECTRAL ANALYSIS OF SOME ALLYLIC ESTERS
Duong Quoc Hoan1, David P. Brown2, Nguyen Dang Dat1,
Pham Thi Linh1 and Cao Xuan Dinh3
1
Faculty of Chemistry, Hanoi National University of Education,
2
Deparment of Chemistry, St. John's College of Liberal Arts and Sciences,
St. John’s University 8000 Utopia Parkway, Queens, NY 1143, USA
3
Duy Tan High School, Kon Tum Province
Abstract. EI MS spectra show that ester bond cleavage is predominant. Compounds 8, 9
and 10 have a molecular weight 400 g/mole or more and suffered fragmentation along
the GC column, hence their molecular ions were not observed. The collected molecular
ions [M]+ correspond to the expected structures and followed [M+1] +, nitrogen rule, and
some first fragmentations. The ortho disubstituted benzene ring such as compound 1
gives peaks at m/z 120 and m/z 161. Compounds 3, 5, 7, 8, 9 and 11 have fragmentations
controlled by the resonance effect to explain the existence of a peak at m/z 147. An MS
analysis of the compounds 3-[2-(allyloxy)phenyl] propanoic acid - containing esters
shows a protonation followed by loss of hydrogen molecules as well. The ortho effect
allows us to state that compound 11 has a peak at m/z 307 as well.
Keywords: Allylic esters, EIMS, ortho effect, resonance effect.
1. Introduction
Electron impact (EI) is one of the most popular methods used for generating ions for
mass spectrometry. High-energy electrons (ca. 70 eV) bombard vapor phase sample
molecules to eject an electron from a sample molecule producing a radical ation that is called
the molecular ion. EI has some disadvantages such as the large internal energy method, and
the rearrangement process complicates spectra, but is has many advantages, for example
a reproducible method, high ionization efficiency, libraries of EI spectra to help identification,
interface to GC possible, all vaporized molecules can be ionized (non-polar and i soluble)
and molecular structural information [1, 2].
Macrolactones are novel heterocylic compounds containing ester linkage. There are
many natural products that are macrolactones, one of those being macrosphelides [3, 4]. One
synthetic method is ring close metathesis (RCM) of alkene substrates using Grubb‟s catalyst
and similarity. Hence, eleven allylic esters, substrates for RCM, were synthesized and
characterized using IR, NMR, elemental analysis and MS [5]. The MS analysis of these
Duong Quoc Hoan, David P. Brown, Nguyen Dang Dat, Pham Thi Linh and Cao Xuan Dinh
4
alkene substrates helps us understand their structures. In this paper, the analysis is focused on
not only on molecular weights but also on primary fragmentations based on effects such as
resonance and ortho effects to obtain more data for these kinds of compounds.
2. Content
2.1. Experiments
2.1.1. Synthesis of some allylic esters
The synthesis of these allylic estes was reported by D. Brown and H.Q. Duong [5]. It is
briefly described in Figure 1.
OH
(CH2)n
O
OH
n = 0, 2
KOH
R
Br
R = H, CH3
O
(CH2)n
O
OH
n = 0, 2
R
SOCl2
DCM, DMAP
X
(CH2)n
O
O
R
III: X= OH; NH2
O
(CH2)n
O
n = 0, 2R
X (CH2)n
O
O
R
X = O, NHI II IV
Figure 1.
First of all, phenolic carboxylic acids (I) were converted to ether carboxylic acids (II)
based on the Williamson‟s ether synthesis. In fact, these reactions gave a mixture of ether
carboxylic acids (II) and ether estes; however, the ether esters were hydrolyzed to obtain ether
carboxylic acids (II). Then the coupling reaction of the ether carboxylic acids was
accomplished with thionyl chloride and phenolic or a iline derivatives (III) to yield diene IV
which are allylic esters.
2.1.2. Method
Gas Chromatography Mass Spectrometry (GC/MS) analyses were performed using the
Shimadzu GCMS-QP5050A system. All compounds were in a liquid state. They were
dissolved in methanol and injected into the GC/MS to perform the MS spectra.
2.2. Results and discussion
2.2.1. Recognition of the molecular peak
One of the difficulties in using the EI method for MS is recognition of the molecular ion
peak [M]+ [1, 2] because thpeak is either weak or cannot be found. The best solution in this
case is to obtain an intense peak at [M+1]+, [M+2]+ plus small fragmentations. Structures and
M+, [M+1]+, and related fragments are shown in Table 1. All allylic esters contain C, H and O
atoms in which C and H atoms are contributing [M+1]+ and O atom contribute to [M+2]+.
However, in our cases, no [M+2]+ peaks observed. While the MS of compound 5 gives
[M+1]+, others might be too small to see on MS spectra. The value of the % (M+1) compared
with [M]+ is calculated based on C22H22O5 of compound 5 using the formula %(M+1)
(1.1 x 22) = 24% [2]. This value is in agreement with the experimental result. In addition,
all of the molecular ion peaks adhere to the nitrogen rule. The molecular ion peaks of
compound 1 to 10 are even numbered because of the absence of nitrogen atoms, while
compound 11 gives an odd number since it has a nitrogen atom in the structure (Table 1).
Mass spectral analysis of some allylic esters
5
Table 1. Molecular ion [M]
+
and molecular ion plus one [M+1]
+
Comp. Formula
M
+
(Calcd./found (%))
m/z (%)
Entry Structure
1
O
O
O O O
C20H18O5
338.35/338 (1)
338 (1), 281(1), 161 (100), 133(28),
121 (11), 105 (20), 92(17), 77(6), 55(3),
41(53).
2
O
O
O
O
O
C20H18O5
338.35/338 (3)
338 (3), 281(2), 161(100), 133(41),
105(20), 92(4), 77(18), 55(4), 41(9).
3
O
O
O
O
O
C22H22O5
366.41/366 (6)
366 (6), 189(35), 161(15), 133(8),
121(22), 91(32), 77(10), 65(14), 55(75),
41(100)
4
O
O
O O
O
C22H22O5
366.41/366 (2)
366 (2), 206(8), 161(100),148(15),
133(39), 105(19),77(16), 65(5), 55 (6),
41(12).
5
O
O
O
O
O
C22H22O5
366.41/366 (6)
366(6), 307(1), 218(5), 189(34),
161(24), 147 (16), 133(5), 121(40),
91(30), 77(10), 65(18), 55(75), 41 (100)
6
O
O
O
O
O
C22H22O5
366.41/366 (3)
366 (3), 189(22), 161 (13), 147 (19),
133(6), 121 (50), 91(37), 77(12),
65(16), 55(50), 41(100).
7
O
O
O
O O
C22H22O5
366.41/366 (3)
366 (3), 189(21), 161(23), 147 (20),
133(5),121(48), 91(36),77(14), 64(15),
55(50), 41(100).
8
O
O
O
O O
C24H26O5
394.46/- (-)
246(6), 206(4), 189(33), 161(7),
148(21), 133(4), 120(15), 91(35),
77(15), 65(7), 55(68), 41(100).
9 O
O
O
O O
C25H28O5
408.49/- (-)
189(7), 160(37), 148(61), 145 (100),
133(22), 120(41), 105(12), 91(94),
77(39), 65(49), 57(53), 51(34).
10 O
O
O
O O
C26H30O5
422.51/- (-)
202(77), 174(18), 159(100), 148(62),
120(46), 91(91), 78(56), 57(64), 51(37),
45(16).
11
N
H
O
O OO
C22H23NO4
365.42/365 (6)
365 (6), 307(20), 177(100), 161(14),
119(56), 91(32), 77(17), 65(20), 55(15),
41(68).
Note: “-“ no data
2.2.2. Resonance effect in fragmentations
Since each compound contains two aromatic rings, a resonance effect is considered for
two substituents in place of orth or para in aromatic rings [1, 2]. Compound 1 and 2 have
almost the same structure except for the ortho-substituted benzoate in compound 1 and the
meta-substituted benzoate in compound 2. Primary fragmentations of compound 1 are shown
in Scheme 1. Either pathway (1) or (2) has a loss of radical C3H5O
(57) to form either
oxonium or acyl ions m/z 281. Interestingly, the fragmentations are identical in both structures
but the peak of m/z 120 is not observed in the compound 2‟s spectrum. See Table 2. This issue
Duong Quoc Hoan, David P. Brown, Nguyen Dang Dat, Pham Thi Linh and Cao Xuan Dinh
6
is explained by a „resonance effect‟ that gives a peak at m/z 120 (see (3), Scheme 1) [2]. The
resonance effect can be observed in eaction (4), Scheme 1, yielding the fragment m/z 161 as
a base peak and a peak at m/z 120 or 121 [6, 7].
O
O
O O O
1
-C3H5O (57)
O
O
O
O
m/z 281C20H18O5
Mol. Wt.: 338
-C3H5O (57)
O
O
O O O
m/z 281
C
O
O
m/z 161
C10H9O3 (177)
(1) (2)
(3)
C
O
O
m/z 120
-C3H5
• (41)
-C10H9O3
•(177)
(4)
H
C
O
O
m/z 121
H
Scheme 1. Primary fragmentations of 2-[(allyloxy)carbonyl]phenyl-2-
(allyloxy)benzoate (1)
In contrast, compound 2 has a base peak at m/z 161 as in compound 1; however it is
supposed that there is a cleavage of an ester bond to give a quite stable fragment m/z 161,
Scheme 2.
O
O
O
O
O
O+
O
-C10H9O3
• (177)
2, C20H18O5
Mol. Wt.: 338
m/z 161
Scheme 2. Primary fragmentation of compound 2
In cases of compound 5 and 7, the resonance effect is not prominent since the lone pair of
electrons on the oxygen atom is conjugated with a C=O bond upon the ester group.
Consequently, the fragment of m/z 309 is not stabilized. Hence, ester bond cleavage is
prominent in these cases, Scheme 3.
O
O
O
O
O
5, C22H22O5
Mol. Wt.: 366
O
O
O C O
O
O
-C3H5O
• (57)
m/z 309
C7H5O2
•
(121)
m/z 189
x
O
O
O
O O
7, C22H22O5
Mol. Wt.: 366
O
O
C7H5O2
•
(121)
m/z 189
O
O
O
-C3H5O
• (57)
m/z 309
x
C
O
a)
b) +
+
Scheme 3. Primary fragmentations of compounds 5 and 7
Compound 3, 5, 7, 8, 9 and 11 have same structure with regards to carboxylic moiety as
drawn in Scheme 4. Besides the cleavage of the ester bond to form fragment m/z 189,
the resonance effect helps in the cleavage of CH2-CH2 bond to produce fragment /z 147,
Scheme 4.
Mass spectral analysis of some allylic esters
7
O
O
O
O
O
C7H5O2
•
(121)
m/z 189
Ar
3, 5, 7, 8, 9, and 11
-Ar
O
m/z 147
Scheme 4. Resonance effect in the fragmentation
of 3-[2-(allyloxy)phenyl]propanoic acid-containing esters
2.2.3. Ortho effect in fragmentations
The ortho effect is observed in the MS spectrum of compound 11 that contain an amide
group in the ortho position of carboxylate in the aromatic rings. Consequently, the radical ion
of molecule 11 is easy to eliminate and a neutral molecule of allylic alcohol forms the radical
ion m/z 307 while a cleavage of the amide bond does not occur, Scheme 5 [1, 2].
-C3H5OH (58)
O
O C7H5O2
•
(121)
m/z 189
N
H
O
O OO
11, C22H23NO4
Mol. Wt.: 365
O
O
N
m/z 307
C
O
x
Scheme 5. Ortho effect in the fragmentation of compound 11
2.2.4. Loss of a hydrogen molecule in the fragmentation of 3-[2-(allyloxy)phenyl]
propanoic acid-containing esters
O
OH
O
O O
C26H29O5
+
Mol. Wt.: 421
O
O
O
O O
10, C26H30O5
Mol. Wt.: 422
+ H
-H2
-C13H15O3
•
(219)
O
OH
m/z 202
O
O
O
Ar
3, 5, 7, 8, and 9
-H2 O
OH
m/z 188
(1)
(2)
O
OH
O
Ar
-Ar
N
H
O
O OO
(3)
+ H
-H2
N
H
O
O OHO
C3H5O
•
(57) N
H
O
O OH
m/z 307m/z 36411, C22H23NO4
Mol. Wt.: 365
+ H
Scheme 6. Loss of a hydrogen molecule in the fragmentation
of 3-[2-(allyloxy)phenyl]propanoic acid-containing esters
Surprisingly, compound 3, 5, 7, 8 and 9 have a peak m/z at 188 along with a peak m/z at 189,
Table 1 and Scheme 6. Compound 9 has a peak at m/z 188 with abundant 50%, but the peak
Duong Quoc Hoan, David P. Brown, Nguyen Dang Dat, Pham Thi Linh and Cao Xuan Dinh
8
at m/z 189 is 5% only. Similarly, compound 10 has a peak at m/z 202 and compound 11 has a
peak m/z 307, Table 1. The formation of peak m/z 189 is explained clearly in Scheme 3 and 4.
In contract, peaks at m/z 188 and 202 are not understandable. It is clear that ester groups are
basic centers; therefore they can be protonated following hydrogen elimination, Scheme 6.
Since compound 11 has an amide bond that is not easily broken, the ester cleavage gives a
peak at m/z 307. The addition of a proton and elimination of a hydrogen molecule gives a
longer conjugated system that stabilizes the ions throughout the GC column.
3. Conclusion
The EI MS spectra of 11 allylic esters was analyzed carefully. A molecular ion [M]+ peak
has been determined based on [M+1]+, the nitrogen rule, fragmentation, the resonance effect,
and the ortho effect. All molecular ions [M]+ match with the nitrogen rule and [M+1]+ ions.
The Molecular ion [M]+ peaks of compound 8, 9 and 10 are not shown in the EI MS spectra.
An MS analysis of compounds 3, 5, 7, 8, 9, 10 and 11 shows a loss of hydrogen molecule.
Fragmentations are effected by the ortho effect or the resonance effect if an aromatic ring has
an ether, amide or a carboxylate group in ortho or para each other.
REFERENCES
[1] Tran Thi Da, Nguyen Huu Dinh, 1999. Application of some spectroscopic methods in
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[3] Nicolaou, K. C. 1977. Synthesis of macrolides. Tetrahedron, Vol. 33, pp. 683-710.
[4] Kobayashi, Y., Kumar, B. G., Kurachi, T., 2000. Total synthesis of macrosphelides B
and A. Tetrahedron Lett., Vol. 41, p. 1559.
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Closing Metathesis of Substituted Phenylalkanoic Acid Allylic Esters. J. Heterocyclic
Chem., Vol. 45, p. 435.
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